QSAlign

Structure search for conserved QSs

Parameters selected: TM-score > 0.65; Seq.identity with query < 80%; Seq.overlap with query > 60%
Inference: The query structure (2-mer) is likely to be incomplete. The PISA-generated QS (4-mer) shows evolutionary conservation with 3e9a_3 and is likely to be correct.
For query 1oab.pdb (2-mer) we found 2 targets matching the structure.
For PISA-generated 1oab_1 (4-mer) we found 2 targets matching the structure.


Sequence search for similar or identical proteins

Query 1oab.pdb (2-mer) - Table for chain A
Target% seq.ident.#subunitsSymmetryQS confidencePrediction
1of8_198.852C2low confidenceWe are uncertain about the physiological relevance of this target's QS. We cannot make a prediction based on it.
5d05_153.824D2high confidenceYour query has a similar sequence to this target. It has a 80% probability to have the same QS
6mdy_122.624D2high confidenceYour query's sequence is fairly distant to this target. It has a 40-60% probability to have the same QS
2jii_122.221NPSunknownWe are uncertain about the physiological relevance of this target's QS. We cannot make a prediction based on it.
Query 1oab.pdb + Target 3e9a_3